PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010940911.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TCP
Protein Properties Length: 361aa    MW: 37169.8 Da    PI: 4.9002
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010940911.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.28.9e-3662139783
             TCP   7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesssssas 83 
                     r++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlq a+pai+++tgt++ +a ++                ++
  XP_010940911.1  62 RSKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQHAEPAIIAATGTGTVPAIATtvdgtlkiP-------TD 139
                     89*********************************************************88888444322222221.......22 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.41963117IPR017887Transcription factor TCP subgroup
PfamPF036346.4E-3063153IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MDLQKQEEEE DEDSQRTDLR MGGGGRGAAM PVHHRLIVPK PEPMEFIGAG PLPFLKRRPA  60
GRSKDRHTKV EGRGRRIRMP AACAARIFQL TRELGHKSDG ETIRWLLQHA EPAIIAATGT  120
GTVPAIATTV DGTLKIPTDV SSFSGYTTSA GGEESARKKL QPTRATAVAA NGGGVAAVPY  180
CCPVAVTDPL LQGGGAISIS TGLAPIASVG AAPAGLVPMW AVGNTVGGRV IPPGALWMLP  240
PSSAIAAGPS TQQPQIWTFP TPPQIINLAG TGPVPAVFPG SVPGLNLVDA QPPPADGSAA  300
VGGKRGGDGA SAAGGAGKTQ ELQLMGESVA SQHGQEAEEQ RQEPEEEEED EEPLSESSPE  360
D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010940911.10.0PREDICTED: transcription factor PCF2-like
SwissprotA2YXQ12e-73PCF2_ORYSI; Transcription factor PCF2
SwissprotQ6ZBH62e-73PCF2_ORYSJ; Transcription factor PCF2
TrEMBLM0TPQ42e-83M0TPQ4_MUSAM; DNA-directed RNA polymerase subunit
STRINGGSMUA_Achr8P12010_0015e-83(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39123167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-47TCP family protein